• Disease Overview
  • Synonyms
  • Signs & Symptoms
  • Causes
  • Affected Populations
  • Disorders with Similar Symptoms
  • Diagnosis
  • Standard Therapies
  • Clinical Trials and Studies
  • References
  • Programs & Resources
  • Complete Report
Select language / seleccionar idioma:

POLR2A-Related Disorder

Print

Last updated: 4/23/2025
Years published: 2025


Acknowledgment

NORD gratefully acknowledges As Healthy As Possible, Marissa Vawter-Lee, MD, Child Neurology, Cincinnati Children’s Hospital Medical Center, Associate Professor, University of Cincinnati Department of Pediatrics and Cincinnati Children’s Department of Child Neurology; Michael F. Wells, PhD, Principal Investigator, UCLA David Geffen School of Medicine; and Christine Erdie-Lalena, MD, FAAP, Developmental Behavioral Pediatrician, Atrium Health Levine Children’s, for the preparation of this report.

 


Advertisement

Disease Overview

Summary

POLR2A-related disorder is a genetic condition caused by changes (variants) in the POLR2A gene. It is characterized that can include developmental delay, low muscle tone (hypotonia), autistic behaviors, seizures (of varying type and intensity) and abnormalities in the muscle and skeletal systems of the body. Psychiatric symptoms have also been reported.1,2,3,4  Onset is typically during the infant and toddler years. The condition is generally noticed as a child begins to miss developmental milestones. Diagnosis is confirmed through genetic testing. The first publication about a POLR2A-related disorder was in 2019 and there are less than 100 reports in the medical literature.1 There is currently no known treatment for POLR2A-related disorder, but symptoms such as seizures can be treated with anti-epileptic medications. While challenges may exist, some affected children have been reported as enjoying a good quality of life.

 

  • Next section >
  • < Previous section
  • Next section >

Synonyms

  • neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities (nedhib)
  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Signs & Symptoms

POLR2A-related disorder is a rare genetic condition that can affect multiple systems in the body. Symptoms can vary from person to person but usually the affected person has neurological and developmental delays.

Common symptoms may include:

  • Neurologic and muscular problems such as:
    • Slower achievement of milestones like sitting, walking, or talking (developmental delay)
    • Cognitive impairment varying from learning difficulties to intellectual disability
    • Sleep disturbances with trouble falling or staying asleep
    • Seizures which may vary in type and severity (epilepsy)
    • Low muscle tone (hypotonia) where the weak or floppy muscles may affect movement
    • Frog-like posture in infancy where a baby’s hips are flexed and their legs are spread out, similar to a frog’s legs
    • Muscle waste or loss (muscle atrophy)
  • Decreased endurance with fatigue or difficulty with physical activities
  • Trouble swallowing or eating (feeding difficulties)
  • Acid reflux (gastroesophageal reflux or GERD) leading to discomfort or vomiting
  • Poor weight gain and growth (failure to thrive)
  • Eye and vision problems such as:
    • Slow development of eyesight (delayed visual maturity)
    • Crossed eyes (strabismus)
    • Farsightedness (hypermetropia) and eye turning inward (esotropia)
    • Reduced ability to see clearly
  • Facial differences such as teeth misalignment, a high-arched palate and widely spaced eyes (hypertelorism)
  • Skeletal anomalies including:
    • Sunken chest (pectus excavatum)
    • Feet that are turned inward (bilateral clubfoot)
    • Fingers or toes that are partially fused (partial cutaneous syndactyly)
    • Underdeveloped thumb muscles
    • Thumbs that are positioned closer to the hand than normal (adducted thumbs)
    • Long feet with large toes
  • Behavioral and emotional problems such as:
    • Difficulty with social interaction or repetitive behaviors (autistic behaviors)
    • Aggressive or self-injurious behaviors such as skin picking or hitting oneself

Other possible symptoms may include:

  • Recurrent respiratory infections
  • Swelling of the kidneys due to fluid buildup (hydronephrosis)
  • Bulge in the lower abdomen or groin (inguinal hernia) caused by tissue pushing through a weak spot in the muscle

MRI exams may show brain abnormalities such as delayed development of white matter in the brain, shrinkage (atrophy) of the white matter, thin or absent corpus callosum (the structure that connects both brain hemispheres), enlarged brain ventricles (ventriculomegaly), shrinkage of the part of the brain (cerebellum) that controls movement (cerebellar atrophy), shrinkage of the lower part (brainstem) of the brain, periventricular cysts (fluid-filled spaces in the brain) and abnormal brain folds (polymicrogyria).

Some gene variants in related polymerase genes have been linked to an increased risk of cancer. However, there is no known connection between POLR2A-related disorder and cancer at this time, though one case of ependymoma (a rare brain tumor) has been reported.5

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Causes

The POLR2A gene, also known as RNA polymerase II subunit A gene, is a gene that has an important function in how cells make proteins. It has instructions to make (codify) the largest subunit of RNA polymerase II, an enzyme responsible for the transcription process of DNA into messenger RNA (mRNA). Transcription is the process of making an RNA copy of a gene’s DNA sequence. This process is essential because mRNA carries genetic instructions to produce proteins that support cell growth, function and repair.

RNA polymerase II is a complex enzyme made up of 12 subunits, with POLR2A being the largest and most important. The POLR2A gene provides instructions for making a protein that is part of the DNA-binding domain of RNA polymerase II. This domain forms a groove where DNA is read and transcribed into RNA. 6 Therefore, this enzyme plays an important regulatory role in the body.

POLR2A is expressed in many different tissues, including the nervous system (brain, spinal cord), digestive system, urinary and reproductive systems and the skin and sensory organs. Therefore, abnormalities in POLR2A can affect multiple body systems, leading to a wide range of symptoms.

Inheritance

Typically, variants in the POLR2A gene are “de novo,” meaning that they are not inherited from a parent. There are reports about truncating and missense variants and in-frame deletions 1,2 A “truncating” variant refers to a variant that prematurely stops protein synthesis resulting in a shortened protein; “missense” describes a variant where a single nucleotide change leads to a different amino acid being coded for in the protein and “in-frame deletion” is a loss (deletion) of DNA nucleotides that does not disrupt the reading frame, meaning the protein is still produced but may be shorter than normal. There has been a published study of a POLR2A variant inherited as an autosomal dominant condition.2

 

 

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Affected populations

As of 2025, about 99 people have been diagnosed worldwide with POLR2A-related disorder. No specific population has been reported to have a greater occurrence of the condition. No diagnoses of this condition have been confirmed in Africa.

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Diagnosis

The diagnosis may be suspected in an infant or toddler with hypotonia, global developmental delay and abnormal MRI imaging. A diagnosis of POLR2A-related disorder can be confirmed with genetic testing.

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Standard Therapies

There is currently no genetic therapy available for direct treatment. Interventions and management of the disorder are symptom specific. These may include specialized feeding techniques/therapies, physical therapy, occupational therapy and speech/language therapy including adaptive communication techniques.  Additional durable medical equipment supports could be necessary and may include pediatric standers, walkers, orthotic supports, safety beds and activity chairs.

Medical specialists who may be included for check-ups after diagnosis or in a multidisciplinary care team can include genetics, child neurology, pediatric cardiology, pediatric pulmonology, pediatric gastroenterology, pediatric physiatry (rehabilitation) and developmental and behavioral pediatrics.

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

Clinical Trials and Studies

A natural history study is being led by the University of Pittsburgh which has also established a patient registry for individuals who have been diagnosed with this rare disorder or have been identified as having a variant in the POLR2A gene or other POLR2 gene. The purpose of a patient registry is to compile information on gene variants and associated symptoms and to potentially follow patients over time. This research aims to understand the full diversity of symptoms and how these symptoms may relate to specific POLR2 gene variants.  Participation in the study involves filling out surveys on patient health, demographic information and genetic testing information. The single criterion for eligibility is that study participants must have had genetic testing that indicates a POLR2A gene variant or variant in another POLR2 gene. Contact [email protected] or the POLR2A patient advocacy group at [email protected] for more information.

Information on current clinical trials is posted on the Internet at https://clinicaltrials.gov/ All studies receiving U.S. Government funding, and some supported by private industry, are posted on this government web site.

For information about clinical trials being conducted at the NIH Clinical Center in Bethesda, MD, contact the NIH Patient Recruitment Office:

Tollfree: (800) 411-1222
TTY: (866) 411-1010
Email: [email protected]

Some current clinical trials are posted on the following page on the NORD website:
https://rarediseases.org/living-with-a-rare-disease/find-clinical-trials/

For information about clinical trials sponsored by private sources, contact:
http://www.centerwatch.com/

For information about clinical trials conducted in Europe, contact:
https://www.clinicaltrialsregister.eu/

  • < Previous section
  • Next section >
  • < Previous section
  • Next section >

References

  1. Haijes HA, Koster MJE, Rehmann H, et al. De Novo Heterozygous POLR2A Variants Cause a Neurodevelopmental Syndrome with Profound Infantile-Onset Hypotonia. Am J Hum Genet. 2019;105(2):283-301. doi:10.1016/j.ajhg.2019.06.016
  2. Hansen AW, Arora P, Khayat MM, et al. Germline mutation in POLR2A: a heterogeneous, multi-systemic developmental disorder characterized by transcriptional dysregulation. HGG Adv. 2021;2(1):100014. doi:10.1016/j.xhgg.2020.100014
  3. Evans DR, Qiao Y, Trost B, et al. Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous POLR2A Variant. Genes (Basel). 2022;13(3):470. Published 2022 Mar 7. doi:10.3390/genes13030470
  4. Giacomini T, Scala M, Nobile G, et al. De novo POLR2A p.(Ile457Thr) variant associated with early-onset encephalopathy and cerebellar atrophy: expanding the phenotypic spectrum. Brain Dev. 2022;44(7):480-485. doi:10.1016/j.braindev.2022.04.002
  5. Paparella R, Caroleo AM, Agolini E, et al. Posterior fossa ependymoma in neurodevelopmental syndrome caused by a de novo germline pathogenic POLR2A variant [published correction appears in Am J Med Genet A. 2023 Mar;191(3):911. doi: 10.1002/ajmg.a.63092]. Am J Med Genet A. 2022;188(9):2796-2802. doi:10.1002/ajmg.a.62869
  6. National Institute of Health (NIH), POLR2A RNA polymerase II subunit A [ Homo sapiens (human) ], Gene ID: 5430, updated on 10-Dec-2024, https://www.ncbi.nlm.nih.gov/gene/5430 Accessed Feb 3, 2025.

INTERNET

POLR2A Parents Facebook Group:  https://www.facebook.com/groups/779639105806149 Accessed April 14, 2025.

  • < Previous section
  • Next section >

Programs & Resources

RareCare logo in two lines.

RareCare® Assistance Programs

NORD strives to open new assistance programs as funding allows. If we don’t have a program for you now, please continue to check back with us.

Additional Assistance Programs

MedicAlert Assistance Program

NORD and MedicAlert Foundation have teamed up on a new program to provide protection to rare disease patients in emergency situations.

Learn more https://rarediseases.org/patient-assistance-programs/medicalert-assistance-program/

Rare Disease Educational Support Program

Ensuring that patients and caregivers are armed with the tools they need to live their best lives while managing their rare condition is a vital part of NORD’s mission.

Learn more https://rarediseases.org/patient-assistance-programs/rare-disease-educational-support/

Rare Caregiver Respite Program

This first-of-its-kind assistance program is designed for caregivers of a child or adult diagnosed with a rare disorder.

Learn more https://rarediseases.org/patient-assistance-programs/caregiver-respite/

Patient Organizations